Feng Luo

TitleAssociate Professor
InstitutionClemson University
DepartmentSchool of Computing
Address102 McAdams Hall
Clemson, South Carolina 29634
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Bishop EH, Kumar R, Luo F, Saski C, Sekhon RS. Genome-wide identification, expression profiling, and network analysis of AT-hook gene family in maize. Genomics. 2020 03; 112(2):1233-1244. PMID: 31323298.
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    2. Sekhon RS, Saski C, Kumar R, Flinn BS, Luo F, Beissinger TM, Ackerman AJ, Breitzman MW, Bridges WC, de Leon N, Kaeppler SM. Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize. Plant Cell. 2019 09; 31(9):1968-1989. PMID: 31239390.
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    3. Cooper EA, Brenton ZW, Flinn BS, Jenkins J, Shu S, Flowers D, Luo F, Wang Y, Xia P, Barry K, Daum C, Lipzen A, Yoshinaga Y, Schmutz J, Saski C, Vermerris W, Kresovich S. A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism. BMC Genomics. 2019 May 27; 20(1):420. PMID: 31133004.
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    4. Wang Y, Zhou L, Yu X, Stover E, Luo F, Duan Y. Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance. Front Plant Sci. 2016; 7:933. PMID: 27446161.
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    5. Chen Z, Wang H, Ionita C, Luo F, Jiang X. Effects of Chicken Litter Storage Time and Ammonia Content on Thermal Resistance of Desiccation-Adapted Salmonella spp. Appl Environ Microbiol. 2015 Oct; 81(19):6883-9. PMID: 26209673.
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    6. Wang Y, Zhou L, Li D, Dai L, Lawton-Rauh A, Srimani PK, Duan Y, Luo F. Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genes. PLoS One. 2015; 10(3):e0121893. PMID: 25811466.
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    7. Dayarian A, Romero R, Wang Z, Biehl M, Bilal E, Hormoz S, Meyer P, Norel R, Rhrissorrakrai K, Bhanot G, Luo F, Tarca AL. Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge. Bioinformatics. 2015 Feb 15; 31(4):462-70. PMID: 25061067.
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    8. Gibson SM, Ficklin SP, Isaacson S, Luo F, Feltus FA, Smith MC. Massive-scale gene co-expression network construction and robustness testing using random matrix theory. PLoS One. 2013; 8(2):e55871. PMID: 23409071.
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    9. Blenda A, Fang DD, Rami JF, Garsmeur O, Luo F, Lacape JM. A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check. PLoS One. 2012; 7(9):e45739. PMID: 23029214.
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    10. Spangler JB, Ficklin SP, Luo F, Freeling M, Feltus FA. Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules. PLoS One. 2012; 7(9):e45041. PMID: 23024789.
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    11. Zhang Y, Li B, Srimani PK, Chen X, Luo F. Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters. Proteome Sci. 2012 Jun 21; 10 Suppl 1:S4. PMID: 22759581.
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    12. Xuan P, Zhang Y, Tzeng TR, Wan XF, Luo F. A quantitative structure-activity relationship (QSAR) study on glycan array data to determine the specificities of glycan-binding proteins. Glycobiology. 2012 Apr; 22(4):552-60. PMID: 22156918.
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    13. Li X, Feltus FA, Sun X, Wang JZ, Luo F. Identifying differentially expressed genes in cancer patients using a non-parameter Ising model. Proteomics. 2011 Oct; 11(19):3845-52. PMID: 21761563.
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    14. Li B, Cao W, Zhou J, Luo F. Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions. BMC Syst Biol. 2011 May 17; 5:73. PMID: 21586150.
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    15. Singh R, Kim J, Shepherd MW, Luo F, Jiang X. Determining thermal inactivation of Escherichia coli O157:H7 in fresh compost by simulating early phases of the composting process. Appl Environ Microbiol. 2011 Jun; 77(12):4126-35. PMID: 21498743.
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    16. Singh R, Jiang X, Luo F. Thermal inactivation of heat-shocked Escherichia coli O157:H7, Salmonella, and Listeria monocytogenes in dairy compost. J Food Prot. 2010 Sep; 73(9):1633-40. PMID: 20828469.
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    17. Ficklin SP, Luo F, Feltus FA. The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks. Plant Physiol. 2010 Sep; 154(1):13-24. PMID: 20668062.
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    18. Kim J, Luo F, Jiang X. Factors impacting the regrowth of Escherichia coli O157:H7 in dairy manure compost. J Food Prot. 2009 Jul; 72(7):1576-84. PMID: 19681288.
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    19. Luo F, Li B, Wan XF, Scheuermann RH. Core and periphery structures in protein interaction networks. BMC Bioinformatics. 2009 Apr 29; 10 Suppl 4:S8. PMID: 19426456.
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    20. Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J. Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory. BMC Bioinformatics. 2007 Aug 14; 8:299. PMID: 17697349.
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    21. Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks. Bioinformatics. 2007 Jan 15; 23(2):207-14. PMID: 17092991.
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    22. Luo F, Zhong J, Yang Y, Zhou J. Application of random matrix theory to microarray data for discovering functional gene modules. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Mar; 73(3 Pt 1):031924. PMID: 16605575.
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