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Feng Ding

TitleAssistant Professor
InstitutionClemson University
DepartmentDepartment of Physics & Astronomy
Address118 Kinard Laboratory
Clemson, South Carolina 29634
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Sun Y, Kakinen A, Xing Y, Pilkington EH, Davis TP, Ke PC, Ding F. Nucleation of ß-rich oligomers and ß-barrels in the early aggregation of human islet amyloid polypeptide. Biochim Biophys Acta Mol Basis Dis. 2019 02 01; 1865(2):434-444. PMID: 30502402.
      View in: PubMed
    2. Yanez Orozco IS, Mindlin FA, Ma J, Wang B, Levesque B, Spencer M, Rezaei Adariani S, Hamilton G, Ding F, Bowen ME, Sanabria H. Identifying weak interdomain interactions that stabilize the supertertiary structure of the N-terminal tandem PDZ domains of PSD-95. Nat Commun. 2018 09 13; 9(1):3724. PMID: 30214057.
      View in: PubMed
    3. Wang B, Sun Y, Davis TP, Ke PC, Wu Y, Ding F. Understanding Effects of PAMAM Dendrimer Size and Surface Chemistry on Serum Protein Binding with Discrete Molecular Dynamics Simulations. ACS Sustain Chem Eng. 2018 Sep 04; 6(9):11704-11715. PMID: 30881771.
      View in: PubMed
    4. Sun Y, Ge X, Xing Y, Wang B, Ding F. ß-barrel Oligomers as Common Intermediates of Peptides Self-Assembling into Cross-ß Aggregates. Sci Rep. 2018 07 09; 8(1):10353. PMID: 29985420.
      View in: PubMed
    5. Sun Y, Ding F, Ming D. Nonnative Energetic Frustrations in Protein Folding at Residual Level: A Simulation Study of Homologous Immunoglobulin-like ß-Sandwich Proteins. Int J Mol Sci. 2018 May 18; 19(5). PMID: 29783701.
      View in: PubMed
    6. Ge X, Sun Y, Ding F. Structures and dynamics of ß-barrel oligomer intermediates of amyloid-beta16-22 aggregation. Biochim Biophys Acta Biomembr. 2018 09; 1860(9):1687-1697. PMID: 29550287.
      View in: PubMed
    7. Xing Y, Pilkington EH, Wang M, Nowell CJ, Kakinen A, Sun Y, Wang B, Davis TP, Ding F, Ke PC. Lysophosphatidylcholine modulates the aggregation of human islet amyloid polypeptide. Phys Chem Chem Phys. 2017 Nov 22; 19(45):30627-30635. PMID: 29115353.
      View in: PubMed
    8. Sun Y, Wang B, Ge X, Ding F. Distinct oligomerization and fibrillization dynamics of amyloid core sequences of amyloid-beta and islet amyloid polypeptide. Phys Chem Chem Phys. 2017 Oct 25; 19(41):28414-28423. PMID: 29038815.
      View in: PubMed
    9. Ge X, Kakinen A, Gurzov EN, Yang W, Pang L, Pilkington EH, Govindan-Nedumpully P, Chen P, Separovic F, Davis TP, Ke PC, Ding F. Zinc-coordination and C-peptide complexation: a potential mechanism for the endogenous inhibition of IAPP aggregation. Chem Commun (Camb). 2017 Aug 22; 53(68):9394-9397. PMID: 28745731.
      View in: PubMed
    10. Wang B, Pilkington EH, Sun Y, Davis TP, Ke PC, Ding F. Modulating protein amyloid aggregation with nanomaterials. Environ Sci Nano. 2017 Sep 01; 4(9):1772-1783. PMID: 29230295.
      View in: PubMed
    11. Wang B, Blin T, Käkinen A, Ge X, Pilkington EH, Quinn JF, Whittaker MR, Davis TP, Ke PC, Ding F. Brushed polyethylene glycol and phosphorylcholine for grafting nanoparticles against protein binding. Polym Chem. 2016 Dec 07; 7(45):6875-6879. PMID: 28348639.
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    12. Nedumpully-Govindan P, Kakinen A, Pilkington EH, Davis TP, Chun Ke P, Ding F. Stabilizing Off-pathway Oligomers by Polyphenol Nanoassemblies for IAPP Aggregation Inhibition. Sci Rep. 2016 Jan 14; 6:19463. PMID: 26763863.
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    13. Nedumpully-Govindan P, Yang Y, Andorfer R, Cao W, Ding F. Promotion or Inhibition of Islet Amyloid Polypeptide Aggregation by Zinc Coordination Depends on Its Relative Concentration. Biochemistry. 2015 Dec 22; 54(50):7335-44. PMID: 26603575.
      View in: PubMed
    14. Nedumpully-Govindan P, Gurzov EN, Chen P, Pilkington EH, Stanley WJ, Litwak SA, Davis TP, Ke PC, Ding F. Graphene oxide inhibits hIAPP amyloid fibrillation and toxicity in insulin-producing NIT-1 cells. Phys Chem Chem Phys. 2016 Jan 07; 18(1):94-100. PMID: 26625841.
      View in: PubMed
    15. Nedumpully-Govindan P, Jemec DB, Ding F. CSAR Benchmark of Flexible MedusaDock in Affinity Prediction and Nativelike Binding Pose Selection. J Chem Inf Model. 2016 06 27; 56(6):1042-52. PMID: 26252196.
      View in: PubMed
    16. Ge X, Ke PC, Davis TP, Ding F. A Thermodynamics Model for the Emergence of a Stripe-like Binary SAM on a Nanoparticle Surface. Small. 2015 Oct 07; 11(37):4894-9. PMID: 26191774.
      View in: PubMed
    17. DeFever RS, Geitner NK, Bhattacharya P, Ding F, Ke PC, Sarupria S. PAMAM dendrimers and graphene: materials for removing aromatic contaminants from water. Environ Sci Technol. 2015 Apr 07; 49(7):4490-7. PMID: 25786141.
      View in: PubMed
    18. Nedumpully-Govindan P, Ding F. Inhibition of IAPP aggregation by insulin depends on the insulin oligomeric state regulated by zinc ion concentration. Sci Rep. 2015 Feb 04; 5:8240. PMID: 25649462.
      View in: PubMed
    19. Radic S, Davis TP, Ke PC, Ding F. Contrasting effects of nanoparticle-protein attraction on amyloid aggregation. RSC Adv. 2015 Jan 01; 5(127):105498. PMID: 26989481.
      View in: PubMed
    20. Wang B, Seabrook SA, Nedumpully-Govindan P, Chen P, Yin H, Waddington L, Epa VC, Winkler DA, Kirby JK, Ding F, Ke PC. Thermostability and reversibility of silver nanoparticle-protein binding. Phys Chem Chem Phys. 2015 Jan 21; 17(3):1728-39. PMID: 25461673.
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    21. Geitner NK, Wang B, Andorfer RE, Ladner DA, Ke PC, Ding F. Structure-function relationship of PAMAM dendrimers as robust oil dispersants. Environ Sci Technol. 2014 Nov 04; 48(21):12868-75. PMID: 25279688.
      View in: PubMed
    22. Radic S, Nedumpully-Govindan P, Chen R, Salonen E, Brown JM, Ke PC, Ding F. Effect of fullerenol surface chemistry on nanoparticle binding-induced protein misfolding. Nanoscale. 2014 Jul 21; 6(14):8340-9. PMID: 24934397.
      View in: PubMed
    23. Nedumpully-Govindan P, Li L, Alexov EG, Blenner MA, Ding F. Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity. Bioinformatics. 2014 Aug 15; 30(16):2302-9. PMID: 24794930.
      View in: PubMed
    24. Ding F, Radic S, Chen R, Chen P, Geitner NK, Brown JM, Ke PC. Direct observation of a single nanoparticle-ubiquitin corona formation. Nanoscale. 2013 Oct 07; 5(19):9162-9. PMID: 23921560.
      View in: PubMed
    25. Radic S, Geitner NK, Podila R, Käkinen A, Chen P, Ke PC, Ding F. Competitive binding of natural amphiphiles with graphene derivatives. Sci Rep. 2013; 3:2273. PMID: 23881402.
      View in: PubMed
    26. Ding F, Dokholyan NV. Incorporating backbone flexibility in MedusaDock improves ligand-binding pose prediction in the CSAR2011 docking benchmark. J Chem Inf Model. 2013 Aug 26; 53(8):1871-9. PMID: 23237273.
      View in: PubMed
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