Feng Ding

TitleAssistant Professor
InstitutionClemson University
DepartmentDepartment of Physics & Astronomy
Address118 Kinard Laboratory
Clemson, South Carolina 29634
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Ma J, Saikia N, Godar S, Hamilton GL, Ding F, Alper J, Sanabria H. Ensemble Switching Unveils a Kinetic Rheostat Mechanism of the Eukaryotic Thiamine Pyrophosphate Riboswitch. RNA. 2021 Apr 16. PMID: 33863818.
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    2. Xing Y, Nandakumar A, Kakinen A, Sun Y, Davis TP, Ke PC, Ding F. Amyloid Aggregation under the Lens of Liquid-Liquid Phase Separation. J Phys Chem Lett. 2021 Jan 14; 12(1):368-378. PMID: 33356290.
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    3. Xing Y, Sun Y, Wang B, Ding F. Morphological Determinants of Carbon Nanomaterial-Induced Amyloid Peptide Self-Assembly. Front Chem. 2020; 8:160. PMID: 32211382.
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    4. Sun Y, Kakinen A, Xing Y, Pilkington EH, Davis TP, Ke PC, Ding F. Nucleation of ß-rich oligomers and ß-barrels in the early aggregation of human islet amyloid polypeptide. Biochim Biophys Acta Mol Basis Dis. 2019 02 01; 1865(2):434-444. PMID: 30502402.
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    5. Yanez Orozco IS, Mindlin FA, Ma J, Wang B, Levesque B, Spencer M, Rezaei Adariani S, Hamilton G, Ding F, Bowen ME, Sanabria H. Identifying weak interdomain interactions that stabilize the supertertiary structure of the N-terminal tandem PDZ domains of PSD-95. Nat Commun. 2018 09 13; 9(1):3724. PMID: 30214057.
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    6. Wang B, Sun Y, Davis TP, Ke PC, Wu Y, Ding F. Understanding Effects of PAMAM Dendrimer Size and Surface Chemistry on Serum Protein Binding with Discrete Molecular Dynamics Simulations. ACS Sustain Chem Eng. 2018 Sep 04; 6(9):11704-11715. PMID: 30881771.
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    7. Sun Y, Ge X, Xing Y, Wang B, Ding F. ß-barrel Oligomers as Common Intermediates of Peptides Self-Assembling into Cross-ß Aggregates. Sci Rep. 2018 07 09; 8(1):10353. PMID: 29985420.
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    8. Sun Y, Ding F, Ming D. Nonnative Energetic Frustrations in Protein Folding at Residual Level: A Simulation Study of Homologous Immunoglobulin-like ß-Sandwich Proteins. Int J Mol Sci. 2018 May 18; 19(5). PMID: 29783701.
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    9. Ge X, Sun Y, Ding F. Structures and dynamics of ß-barrel oligomer intermediates of amyloid-beta16-22 aggregation. Biochim Biophys Acta Biomembr. 2018 09; 1860(9):1687-1697. PMID: 29550287.
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    10. Xing Y, Pilkington EH, Wang M, Nowell CJ, Kakinen A, Sun Y, Wang B, Davis TP, Ding F, Ke PC. Lysophosphatidylcholine modulates the aggregation of human islet amyloid polypeptide. Phys Chem Chem Phys. 2017 Nov 22; 19(45):30627-30635. PMID: 29115353.
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    11. Sun Y, Wang B, Ge X, Ding F. Distinct oligomerization and fibrillization dynamics of amyloid core sequences of amyloid-beta and islet amyloid polypeptide. Phys Chem Chem Phys. 2017 Oct 25; 19(41):28414-28423. PMID: 29038815.
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    12. Ge X, Kakinen A, Gurzov EN, Yang W, Pang L, Pilkington EH, Govindan-Nedumpully P, Chen P, Separovic F, Davis TP, Ke PC, Ding F. Zinc-coordination and C-peptide complexation: a potential mechanism for the endogenous inhibition of IAPP aggregation. Chem Commun (Camb). 2017 Aug 22; 53(68):9394-9397. PMID: 28745731.
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    13. Wang B, Pilkington EH, Sun Y, Davis TP, Ke PC, Ding F. Modulating protein amyloid aggregation with nanomaterials. Environ Sci Nano. 2017 Sep 01; 4(9):1772-1783. PMID: 29230295.
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    14. Wang B, Blin T, Käkinen A, Ge X, Pilkington EH, Quinn JF, Whittaker MR, Davis TP, Ke PC, Ding F. Brushed polyethylene glycol and phosphorylcholine for grafting nanoparticles against protein binding. Polym Chem. 2016 Dec 07; 7(45):6875-6879. PMID: 28348639.
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    15. Nedumpully-Govindan P, Kakinen A, Pilkington EH, Davis TP, Chun Ke P, Ding F. Stabilizing Off-pathway Oligomers by Polyphenol Nanoassemblies for IAPP Aggregation Inhibition. Sci Rep. 2016 Jan 14; 6:19463. PMID: 26763863.
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    16. Nedumpully-Govindan P, Yang Y, Andorfer R, Cao W, Ding F. Promotion or Inhibition of Islet Amyloid Polypeptide Aggregation by Zinc Coordination Depends on Its Relative Concentration. Biochemistry. 2015 Dec 22; 54(50):7335-44. PMID: 26603575.
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    17. Nedumpully-Govindan P, Gurzov EN, Chen P, Pilkington EH, Stanley WJ, Litwak SA, Davis TP, Ke PC, Ding F. Graphene oxide inhibits hIAPP amyloid fibrillation and toxicity in insulin-producing NIT-1 cells. Phys Chem Chem Phys. 2016 Jan 07; 18(1):94-100. PMID: 26625841.
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    18. Nedumpully-Govindan P, Jemec DB, Ding F. CSAR Benchmark of Flexible MedusaDock in Affinity Prediction and Nativelike Binding Pose Selection. J Chem Inf Model. 2016 06 27; 56(6):1042-52. PMID: 26252196.
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    19. Ge X, Ke PC, Davis TP, Ding F. A Thermodynamics Model for the Emergence of a Stripe-like Binary SAM on a Nanoparticle Surface. Small. 2015 Oct 07; 11(37):4894-9. PMID: 26191774.
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    20. DeFever RS, Geitner NK, Bhattacharya P, Ding F, Ke PC, Sarupria S. PAMAM dendrimers and graphene: materials for removing aromatic contaminants from water. Environ Sci Technol. 2015 Apr 07; 49(7):4490-7. PMID: 25786141.
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    21. Nedumpully-Govindan P, Ding F. Inhibition of IAPP aggregation by insulin depends on the insulin oligomeric state regulated by zinc ion concentration. Sci Rep. 2015 Feb 04; 5:8240. PMID: 25649462.
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    22. Radic S, Davis TP, Ke PC, Ding F. Contrasting effects of nanoparticle-protein attraction on amyloid aggregation. RSC Adv. 2015 Jan 01; 5(127):105498. PMID: 26989481.
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    23. Wang B, Seabrook SA, Nedumpully-Govindan P, Chen P, Yin H, Waddington L, Epa VC, Winkler DA, Kirby JK, Ding F, Ke PC. Thermostability and reversibility of silver nanoparticle-protein binding. Phys Chem Chem Phys. 2015 Jan 21; 17(3):1728-39. PMID: 25461673.
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    24. Geitner NK, Wang B, Andorfer RE, Ladner DA, Ke PC, Ding F. Structure-function relationship of PAMAM dendrimers as robust oil dispersants. Environ Sci Technol. 2014 Nov 04; 48(21):12868-75. PMID: 25279688.
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    25. Radic S, Nedumpully-Govindan P, Chen R, Salonen E, Brown JM, Ke PC, Ding F. Effect of fullerenol surface chemistry on nanoparticle binding-induced protein misfolding. Nanoscale. 2014 Jul 21; 6(14):8340-9. PMID: 24934397.
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    26. Nedumpully-Govindan P, Li L, Alexov EG, Blenner MA, Ding F. Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity. Bioinformatics. 2014 Aug 15; 30(16):2302-9. PMID: 24794930.
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    27. Ding F, Radic S, Chen R, Chen P, Geitner NK, Brown JM, Ke PC. Direct observation of a single nanoparticle-ubiquitin corona formation. Nanoscale. 2013 Oct 07; 5(19):9162-9. PMID: 23921560.
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    28. Radic S, Geitner NK, Podila R, Käkinen A, Chen P, Ke PC, Ding F. Competitive binding of natural amphiphiles with graphene derivatives. Sci Rep. 2013; 3:2273. PMID: 23881402.
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    29. Ding F, Dokholyan NV. Incorporating backbone flexibility in MedusaDock improves ligand-binding pose prediction in the CSAR2011 docking benchmark. J Chem Inf Model. 2013 Aug 26; 53(8):1871-9. PMID: 23237273.
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