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Eileen Theresa Kraemer

TitleDept Chair/Head
InstitutionClemson University
DepartmentSchool of Computing
Address102 McAdams Hall
Clemson, South Carolina 29634
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Cade S, Doherty R, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Hu S, Iodice J, Kissinger JC, Kraemer ET, Li W, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ, Wang H, Warrenfeltz S. EuPathDB: the eukaryotic pathogen database. Nucleic Acids Res. 2013 Jan; 41(Database issue):D684-91. PMID: 23175615.
      View in: PubMed
    2. Fischer S, Aurrecoechea C, Brunk BP, Gao X, Harb OS, Kraemer ET, Pennington C, Treatman C, Kissinger JC, Roos DS, Stoeckert CJ. The Strategies WDK: a graphical search interface and web development kit for functional genomics databases. Database (Oxford). 2011; 2011:bar027. PMID: 21705364.
      View in: PubMed
    3. Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Caler EV, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Iodice J, Kissinger JC, Kraemer ET, Li W, Nayak V, Pennington C, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ, Treatman C, Wang H. AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species. Nucleic Acids Res. 2011 Jan; 39(Database issue):D612-9. PMID: 20974635.
      View in: PubMed
    4. Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ, Thibodeau R, Treatman C, Wang H. EuPathDB: a portal to eukaryotic pathogen databases. Nucleic Acids Res. 2010 Jan; 38(Database issue):D415-9. PMID: 19914931.
      View in: PubMed
    5. Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H. TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Res. 2010 Jan; 38(Database issue):D457-62. PMID: 19843604.
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    6. Aurrecoechea C, Brestelli J, Brunk BP, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Stoeckert CJ, Treatman C, Wang H. PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Res. 2009 Jan; 37(Database issue):D539-43. PMID: 18957442.
      View in: PubMed
    7. Aurrecoechea C, Brestelli J, Brunk BP, Carlton JM, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Miller JA, Morrison HG, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Stoeckert CJ, Sullivan S, Treatman C, Wang H. GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Res. 2009 Jan; 37(Database issue):D526-30. PMID: 18824479.
      View in: PubMed
    8. Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ, Roos DS, Kissinger JC. ApiDB: integrated resources for the apicomplexan bioinformatics resource center. Nucleic Acids Res. 2007 Jan; 35(Database issue):D427-30. PMID: 17098930.
      View in: PubMed
    9. Wang H, Su Y, Mackey AJ, Kraemer ET, Kissinger JC. SynView: a GBrowse-compatible approach to visualizing comparative genome data. Bioinformatics. 2006 Sep 15; 22(18):2308-9. PMID: 16844709.
      View in: PubMed
    10. Heiges M, Wang H, Robinson E, Aurrecoechea C, Gao X, Kaluskar N, Rhodes P, Wang S, He CZ, Su Y, Miller J, Kraemer E, Kissinger JC. CryptoDB: a Cryptosporidium bioinformatics resource update. Nucleic Acids Res. 2006 Jan 01; 34(Database issue):D419-22. PMID: 16381902.
      View in: PubMed
    11. Warrenfeltz S, Pavlik S, Datta S, Kraemer ET, Benigno B, McDonald JF. Gene expression profiling of epithelial ovarian tumours correlated with malignant potential. Mol Cancer. 2004 Oct 07; 3:27. PMID: 15471544.
      View in: PubMed
    12. Dong S, Kraemer E. Calculation, visualization, and manipulation of MASTs (Maximum Agreement Subtrees). Proc IEEE Comput Syst Bioinform Conf. 2004; 405-14. PMID: 16448033.
      View in: PubMed
    13. Farahi K, Whitman WB, Kraemer ET. RED-T: utilizing the Ratios of Evolutionary Distances for determination of alternative phylogenetic events. Bioinformatics. 2003 Nov 01; 19(16):2152-4. PMID: 14594724.
      View in: PubMed
    14. Wang J, Kraemer E. GFPE: gene-finding program evaluation. Bioinformatics. 2003 Sep 01; 19(13):1712-3. PMID: 15593401.
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    15. Xu Z, Lance B, Vargas C, Arpinar B, Bhandarkar S, Kraemer E, Kochut KJ, Miller JA, Wagner JR, Weise MJ, Wunderlich JK, Stringer J, Smulian G, Cushion MT, Arnold J. Mapping by sequencing the Pneumocystis genome using the ordering DNA sequences V3 tool. Genetics. 2003 Apr; 163(4):1299-313. PMID: 12702676.
      View in: PubMed
    16. Kraemer E, Wang J, Guo J, Hopkins S, Arnold J. An analysis of gene-finding programs for Neurospora crassa. Bioinformatics. 2001 Oct; 17(10):901-12. PMID: 11673234.
      View in: PubMed
    17. Kraemer ET, Ferrin TE. Molecules to maps: tools for visualization and interaction in support of computational biology. Bioinformatics. 1998; 14(9):764-71. PMID: 9918946.
      View in: PubMed
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