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Jijun Tang

TitleDr.
InstitutionUniversity of South Carolina
DepartmentComputer Sci & Engr
AddressNA
301 Main St
Columbia, South Carolina 29208
Phone(803) 777-8923
FaxNA
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Zhang Y, An L, Xu J, Zhang B, Zheng WJ, Hu M, Tang J, Yue F. Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus. Nat Commun. 2018 02 21; 9(1):750. PMID: 29467363.
      View in: PubMed
    2. Zhou L, Lin Y, Feng B, Zhao J, Tang J. Phylogeny analysis from gene-order data with massive duplications. BMC Genomics. 2017 10 16; 18(Suppl 7):760. PMID: 29513196.
      View in: PubMed
    3. Zhou J, Lin Y, Rajan V, Hoskins W, Feng B, Tang J. Analysis of gene copy number changes in tumor phylogenetics. Algorithms Mol Biol. 2016; 11:26. PMID: 27688796.
      View in: PubMed
    4. Shepherd JJ, Zhou L, Arndt W, Zhang Y, Zheng WJ, Tang J. Exploring genomes with a game engine. Faraday Discuss. 2014; 169:443-53. PMID: 25340329.
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    5. Gao N, Yang N, Tang J. Ancestral genome inference using a genetic algorithm approach. PLoS One. 2013; 8(5):e62156. PMID: 23658708.
      View in: PubMed
    6. Luo H, Arndt W, Zhang Y, Shi G, Alekseyev MA, Tang J, Hughes AL, Friedman R. Phylogenetic analysis of genome rearrangements among five mammalian orders. Mol Phylogenet Evol. 2012 Dec; 65(3):871-82. PMID: 22929217.
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    7. Zhang Y, Hu F, Tang J. A mixture framework for inferring ancestral gene orders. BMC Genomics. 2012; 13 Suppl 1:S7. PMID: 22369143.
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    8. Sakib MN, Tang J, Zheng WJ, Huang CT. Improving transmission efficiency of large sequence alignment/map (SAM) files. PLoS One. 2011; 6(12):e28251. PMID: 22164252.
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    9. Luo H, Friedman R, Tang J, Hughes AL. Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus. Mol Biol Evol. 2011 Oct; 28(10):2751-60. PMID: 21531921.
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    10. Luo H, Tang J, Friedman R, Hughes AL. Ongoing purifying selection on intergenic spacers in group A streptococcus. Infect Genet Evol. 2011 Mar; 11(2):343-8. PMID: 21115137.
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    11. Asbury TM, Mitman M, Tang J, Zheng WJ. Genome3D: a viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. BMC Bioinformatics. 2010 Sep 02; 11:444. PMID: 20813045.
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    12. Shi J, Zhang Y, Luo H, Tang J. Using jackknife to assess the quality of gene order phylogenies. BMC Bioinformatics. 2010 Apr 06; 11:168. PMID: 20370914.
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    13. Luo H, Sun Z, Arndt W, Shi J, Friedman R, Tang J. Gene order phylogeny and the evolution of methanogens. PLoS One. 2009 Jun 29; 4(6):e6069. PMID: 19562076.
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    14. Yue F, Tang J. A space-efficient algorithm for three sequence alignment and ancestor inference. Int J Data Min Bioinform. 2009; 3(2):192-204. PMID: 19517989.
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    15. Luo H, Shi J, Arndt W, Tang J, Friedman R. Gene order phylogeny of the genus Prochlorococcus. PLoS One. 2008; 3(12):e3837. PMID: 19050756.
      View in: PubMed
    16. Arndt W, Tang J. Improving reversal median computation using commuting reversals and cycle information. J Comput Biol. 2008 Oct; 15(8):1079-92. PMID: 18774904.
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    17. Yue F, Zhang M, Tang J. Phylogenetic reconstruction from transpositions. BMC Genomics. 2008 Sep 16; 9 Suppl 2:S15. PMID: 18831780.
      View in: PubMed
    18. Yue F, Cui L, dePamphilis CW, Moret BM, Tang J. Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat. BMC Genomics. 2008; 9 Suppl 1:S25. PMID: 18366615.
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